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GRiD v0 documentation
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GRiD v0 documentation

Contents:

  • Welcome to GRiD’s documentation!
  • Example Pipeline Jobs
    • SLURM Job Example
    • Python Pipeline Example
  • Contributing
  • Code of Conduct
  • Modules
    • GRiD Core Module
    • Utilities Overview
    • Helper Functions
    • Read Counting Module
    • Mosdepth Coverage Analysis
    • Mosdepth Coverage Normalization
    • Neighbor Finding Module
    • LPA Realignment Module
    • Diploid Copy Number Computation
    • KIV-2 Copy Number Estimation
    • CRAM Index Management
    • CRAM Subsetting
    • Extract Reference Sequences
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